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【Publication】Visualizing Newly Synthesized Proteins and Their Degradation Dynamics by Using Long-Wavelength-Emitting Fluorescent Dye–DBCO Conjugates

August 13, 2026

August 13, 2026

Co-authored by researchers from Bio2Q and published in the journal Bioconjugate Chemistry, this study developed a new technology to observe the real-time process of proteins in living cells from “birth to degradation.” Using cell-friendly, long-wavelength fluorescent probes combined with click chemistry, the researchers selectively labeled newly synthesized proteins inside living cells. As a result, they were able to capture protein degradation pathways while revealing that newly synthesized proteins accumulate in senescent cells due to impaired lysosomal function.

Title Visualizing Newly Synthesized Proteins and Their Degradation Dynamics by Using Long-Wavelength-Emitting Fluorescent Dye–DBCO Conjugates
Authors Shun Sumitani 1, Eita Sasaki 1, Hisashi Ohno 1, Sota Yamada 1, Orie Takayama 1, Fan-Yan Wei 2, Yoshihiko Kuchitsu 3, Tomohiko Taguchi 3, Kenjiro Hanaoka 1, 4
Short Description

This study, co-authored by researchers from both Bio2Q and Keio University, demonstrates how newly synthesized proteins can be visualized and tracked in living cells using long-wavelength fluorescent probes, enabling real-time observation of protein degradation dynamics.

Maintaining protein homeostasis through the balanced synthesis and degradation of proteins is essential for cellular health, yet existing methods for monitoring newly synthesized proteins typically require cell fixation, or they lack compatibility with live-cell imaging, limiting their ability to capture these dynamic processes. Here, this team of researchers developed two fluorescent probes that selectively label newly synthesized proteins in living cells, allowing their fate to be followed over time without disrupting cellular function. The approach was used to revealed the gradual degradation of newly synthesized proteins through both proteasomal and lysosomal pathways and further showed that protein turnover is impaired in drug-induced senescent cells, where newly synthesized proteins accumulate because of reduced lysosomal activity.

By enabling continuous visualization of protein synthesis and degradation in living cells, this study establishes a versatile platform for investigating proteostasis and provides a valuable tool for studying the molecular mechanisms underlying aging, neurodegenerative disorders, cancer, and other diseases associated with disrupted protein homeostasis.

DOI 10.1038/s41598-026-46977-x
Journal Bioconjugate Chemistry
Vol/Num/Page
37 (5): 922–929.
Publication Date April, 2026

Affiliations

1 Graduate School of Pharmaceutical Sciences, Keio University, 1-5-30 Shibakoen, Minato-ku, Tokyo 105-8512, Japan.
2 Department of Modomics Biology and Medicine, Institute of Development, Aging and Cancer (IDAC), Tohoku University, Sendai 980-8575, Japan.
3 Department of Integrative Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai 980-8575, Japan.
4 Human Biology-Microbiome-Quantum Research Center (WPI-Bio2Q), Keio University, Tokyo 108-8345, Japan.

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